Fine fragmentation and DSG cross-linking improves loop detection a.

An optimized protocol for rapid, sensitive and robust on-bead ChIP-seq from primary cells

Binless interaction detection has an improved true positive rate

Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics - ScienceDirect

Two-Step Cross-linking for Analysis of Protein–Chromatin Interactions

Chromatin loops are better detected in experiments with fine

Genes, Free Full-Text

Phosphorylation activates the yeast small heat shock protein Hsp26 by weakening domain contacts in the oligomer ensemble. - Abstract - Europe PMC

Hakan OZADAM University of Massachusetts Medical School

Frontiers Detection of Arc/Arg3.1 oligomers in rat brain: constitutive and synaptic activity-evoked dimer expression in vivo

Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C, Epigenetics & Chromatin

Towards low false discovery rate estimation for protein-protein interactions detected by chemical cross-linking - ScienceDirect

BRD2 compartmentalizes the accessible genome. - Abstract - Europe PMC

Marlies E. Oomen's research works

Chemical cross-linking with mass spectrometry: a tool for systems structural biology. - Abstract - Europe PMC